Dies ist eine alte Version des Dokuments!

Already Included

We are also allowed to include (less Important, can be included later)

• SBMLSqueezer (plugin for celldesigner)
• latex2sbml
• ModelMage (wrapper needed for COPASI non-commercial use)
• TIde (also needs a wrapper for COPASI) (Download and installation instructions)
• SBML-PET
• R 2.8
• SBMLeditor
• Cytoscape
• E-cell System
• Meso-RD
• epydoc
• Dizzy
• protege
• SBML ODE Solver (Christoph Flamm University of Vienna, Austria www die haben auch iher eigene LiveCD gemacht, Debian based, mit tutorials, emial kontakt aufnehmen)

SBML/BIOPax Models

• BioModels (curated already included)
• yeast jamboree
• BioCyc, EcoCyc, …
• JWS Online

We have to check the legal restrictions for:

• Vanted
• Binom (plugin to connect celldesigner and cytoscape)