Unterschiede
Hier werden die Unterschiede zwischen zwei Versionen angezeigt.
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software_included0.5 [2011/03/01 15:55] (aktuell) ivomaintz created |
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| + | ======= Systems Biology Software ====== | ||
| + | |||
| + | * BioNetGen 2.1.5 | ||
| + | * Cain 1.5 | ||
| + | * CellDesigner 4.1 (including plugin SBMLsqueezer 1.3) | ||
| + | * COPASI 4.5.30 with java and python bindings | ||
| + | * Cytoscape 2.8.1 (including plugin BiNoM 1) | ||
| + | * Edinburgh Pathway Editor 3.0.0 | ||
| + | * Ekee 2.0.2 | ||
| + | * ISATools 1.3 | ||
| + | * JSim 1.6.98 | ||
| + | * libSBML 3.4.1 (with java, python, matlab bindings) | ||
| + | * libSBML 4.1.0 (with java, python, matlab bindings, in /opt/lib/) | ||
| + | * modelMage 1.0beta | ||
| + | * OpenAlea/VPlants/Alinea 0.9 | ||
| + | * Protege 4.1-beta.213 | ||
| + | * RuleBuilder 1.51 | ||
| + | * SBML2LaTeX 0.9.8 | ||
| + | * SBML-PET-MPI 1.1 (also in a singlecore version) | ||
| + | * SBMLeditor 1.3.4 | ||
| + | * SystemsBiologyWorkbench 2.8.1 | ||
| + | * SQuad 2 | ||
| + | * semanticSBML 1.0.11 | ||
| + | * STSE 20110222svn | ||
| + | * Taverna Workbench 2.2.0 | ||
| + | * vanted 1.9 | ||
| + | * vcell 4.8beta | ||
| + | * vmd 1.8.7 | ||
| + | * TiDE 1.2.1 | ||
| + | * Xppaut 6.0 | ||
| + | |||
| + | ====== Systems Biology Models ====== | ||
| + | |||
| + | * BioModels Database 27.04.10 | ||
| + | * Yeast consensus model version 2.0 | ||
| + | |||
| + | ===== Convenience Tools ===== | ||
| + | |||
| + | * gtk-recordMyDesktop | ||
| + | * TexLive 2009 | ||
| + | * QTOctave 0.9.2 with many octave-modules | ||
| + | * XML Copy Editor 1.2.0.6 | ||
| + | |||
| + | ===== Python ===== | ||
| + | |||
| + | * BooleanNet 1.2.5 | ||
| + | * epydoc 3.0.1 | ||
| + | * NumArray 1.5.2 | ||
| + | * NumPy 1.3.1 | ||
| + | * PysCes 0.7.8 | ||
| + | * Python 2.6.6 | ||
| + | * IPython 0.10 | ||
| + | * PyX 0.10 | ||
| + | * Soappy 0.12.0 | ||
| + | * SciPy 0.7.2 | ||