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software_included0.5 [2011/03/01 15:55] (aktuell)
ivomaintz created
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 +======= Systems Biology Software ======
 +
 +  * BioNetGen 2.1.5
 +  * Cain 1.5
 +  * CellDesigner 4.1 (including plugin SBMLsqueezer 1.3)
 +  * COPASI 4.5.30 with java and python bindings
 +  * Cytoscape 2.8.1 (including plugin BiNoM 1)
 +  * Edinburgh Pathway Editor 3.0.0
 +  * Ekee 2.0.2
 +  * ISATools 1.3
 +  * JSim 1.6.98
 +  * libSBML 3.4.1 (with java, python, matlab bindings)
 +  * libSBML 4.1.0 (with java, python, matlab bindings, in /opt/lib/)
 +  * modelMage 1.0beta
 +  * OpenAlea/​VPlants/​Alinea 0.9
 +  * Protege 4.1-beta.213
 +  * RuleBuilder 1.51
 +  * SBML2LaTeX 0.9.8
 +  * SBML-PET-MPI 1.1 (also in a singlecore version)
 +  * SBMLeditor 1.3.4
 +  * SystemsBiologyWorkbench 2.8.1
 +  * SQuad 2
 +  * semanticSBML 1.0.11
 +  * STSE 20110222svn
 +  * Taverna Workbench 2.2.0
 +  * vanted 1.9
 +  * vcell 4.8beta
 +  * vmd 1.8.7
 +  * TiDE 1.2.1
 +  * Xppaut 6.0
 +
 +====== Systems Biology Models ======
 +
 +  * BioModels Database 27.04.10
 +  * Yeast consensus model version 2.0
 +
 +===== Convenience Tools =====
 +
 +  * gtk-recordMyDesktop
 +  * TexLive 2009
 +  * QTOctave 0.9.2 with many octave-modules
 +  * XML Copy Editor 1.2.0.6
 +
 +===== Python =====
 +
 +  * BooleanNet 1.2.5
 +  * epydoc 3.0.1
 +  * NumArray 1.5.2
 +  * NumPy 1.3.1
 +  * PysCes 0.7.8
 +  * Python 2.6.6
 +  * IPython 0.10
 +  * PyX 0.10
 +  * Soappy 0.12.0
 +  * SciPy 0.7.2
  
 
software_included0.5.txt · Zuletzt geändert: 2011/03/01 15:55 von ivomaintz
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