Unterschiede
Hier werden die Unterschiede zwischen zwei Versionen angezeigt.
| Beide Seiten der vorigen Revision Vorhergehende Überarbeitung Nächste Überarbeitung | Vorhergehende Überarbeitung | ||
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software_list [2009/05/11 07:52] 141.20.63.24 moved items from todo to already included |
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| - | Already Included | ||
| - | * semanticSBML (wrapper needed for KEGG license) | ||
| - | * libSBML 3 ([[http:// | ||
| - | * Python 2.5, IPython | ||
| - | * CellDesigner (IMPORTANT: bug fix needed for use within ubuntu: [[Tools/]] ) | ||
| - | * Biomodels | ||
| - | * COPASI (wrapper needed for restricting access to non-commercial use) | ||
| - | * gtk-recordMyDesktop | ||
| - | * a simple XML editor (kxml, eclipse, [[http:// | ||
| - | * Xppaut | ||
| - | * SciPy | ||
| - | * NumPy | ||
| - | We are also allowed to include (less Important, can be included later) | ||
| - | * SBMLSqueezer (plugin for celldesigner) | ||
| - | * latex2sbml | ||
| - | * ModelMage (wrapper needed for COPASI non-commercial use) | ||
| - | * TIde (also needs a wrapper for COPASI) [[http:// | ||
| - | * SBML-PET | ||
| - | * R 2.8 | ||
| - | * SBMLeditor | ||
| - | * Cytoscape | ||
| - | * E-cell System | ||
| - | * Meso-RD | ||
| - | * epydoc | ||
| - | * Dizzy | ||
| - | * protege | ||
| - | * SBML ODE Solver (Christoph Flamm University of Vienna, Austria [[http:// | ||
| - | |||
| - | SBML/BIOPax Models | ||
| - | * BioModels (curated already included) | ||
| - | * yeast jamboree | ||
| - | * BioCyc, EcoCyc, ... | ||
| - | * JWS Online | ||
| - | |||
| - | We have to check the legal restrictions for: | ||
| - | * Vanted | ||
| - | * Binom (plugin to connect celldesigner and cytoscape) | ||