CellDesigner 4.0.1 (including plugin SBMLsqueezer 1.1)
COPASI 4.4.29
semanticSBML 1.0.8
Xppaut 5.98
TiDE
Cytoscape 2.6.2 (including plugin BiNoM)
SBMLeditor
SBML2LaTeX
OpenAlea
libSBML 3.3.2
R 2.8
Taverna 2.1 beta 2
ISA-Tools: ISAcreator …
SBGN: EPE Edinburgh Pathway Editor SBGN
SBGN: Arcadia