The collected links will be included as browser bookmarks in future versions of SB.OS.
Systems Biology Graphical Notation (SBGN) Templates (use this to standardize your graphical network models) http://sbgn.org/Documents/Templates
Wikipedia http://www.wikipedia.org/
Social Network: myExperiment makes it easy to find, use and share scientific workflows and other Research Objects http://www.myexperiment.org/
OpenHelix On-demand, multimedia, narrated tutorials on a large number of the most popular and powerful free web-based bioinformatics tools. You get the web tutorial, PowerPoint slides, handouts, and exercises. http://openhelix.com/
Minimum Information Checklists for Biologial Data: MIBBI Minimum Information for Biological and Biomedical Investigations http://mibbi.sourceforge.net/
Insert your title and/or abstract and get suggestion in which journal you should publish http://www.biosemantics.org/jane/
Open source SOPs http://openwetware.org/
Links to Bioinformatics/Systems Biology tools and resources http://www.bioinfowiki.mpg.de/
Systems Biology - A Textbook http://eu.wiley.com/WileyCDA/WileyTitle/productCd-3527318747.html
SBML www.sbml.org
MIRIAM resources http://www.ebi.ac.uk/miriam/
BioModels Database http://www.ebi.ac.uk/biomodels-main/
JWS model database http://jjj.biochem.sun.ac.za/database/
E-cell http://www.e-cell.org/ecell/
Zotero is a free, easy-to-use Firefox extension to help you collect, manage, and cite your research sources. It lives right where you do your work—in the web browser itself. http://www.zotero.org/
Ubuntu Science Software https://help.ubuntu.com/community/UbuntuScience
Pathguide contains information about 299 biological pathway resources (hinting SBML/BioPAX/CellML export capability ) http://www.pathguide.org/
Sacharomyces Genome Database http://www.yeastgenome.org/
Thermodynamics of Enzyme-Catalyzed Reactions http://xpdb.nist.gov/enzyme_thermodynamics/
EMBL Nucleotide Sequence Database http://www.ebi.ac.uk/embl
Fly View - Drosophila development and genetics http://pbio07.uni-muenster.de/
GenBank - all known nucleotide and protein sequences http://www.ncbi.nlm.nih.gov/Genbank/GenbankOverview.html
Kyoto Encyclopedia of Genes and Genomes (KEGG) http://www.genome.ad.jp/kegg
PDB - Structure data determined by X-ray crystallography and NMR http://www.rcsb.org/pdb
WikiPathways In the new tradition of Wikipedia, WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community. http://www.wikipathways.org/
Reactome - a curated knowledgebase of biological pathways http://www.reactome.org/
BioCyc is a collection of 507 Pathway/Genome Databases. http://biocyc.org/
Ontology Lookup Service http://www.ebi.ac.uk/ontology-lookup/
BioCatalogue: providing a curated catalogue of Life Science Web Services. http://www.biocatalogue.org/
LaTeX Bibliography Styles Database http://bst.maururu.net/
The Database of Useful Biological Numbers http://bionumbers.hms.harvard.edu/
Innovationskolleg Theoretische Biologie (ITB) - Hanspeter Herzel, Peter Hammerstein, Andreas Herz http://itb.biologie.hu-berlin.de/
Theoretical Biochemistry, Charité - Hermann-Georg Holzhütter http://www.charite.de/
Göteborg Yeast Centre - Stefan Hohmann http://www.gmm.gu.se/gyc/index.html
Metabolic Control Analysis Research Group - David Fell http://bms-mudshark.brookes.ac.uk/
Molecular Cell Physiology - Hans Westerhoff http://www.bio.vu.nl/vakgroepen/mcp/
Computational Physiology Hamiliton Institute - Wilhelm Huisinga http://www.hamilton.ie/compphysiol/
Institut für Biologie, Humboldt-Universität http://www.biologie.hu-berlin.de/
Zentrum für BioPhysik und BioInformatik der Humboldt-Universität (BPI) http://www.biologie.hu-berlin.de/%7EBPI/
Humboldt University Research Initiative „Systems Biology“ http://bioinf.charite.de/biophys/systemsbiology/
SFB 555 Complex Nonlinear Processes http://sfb555.physik.hu-berlin.de/
SFB 618 Theoretical Biology: Robustness, Modularity and Evolutionary Design of Living Systems http://www.biologie.hu-berlin.de/forschung/SFB_618/
Graduate program - Dynamics and evolution of cellular and macromolecular processes http://www.biologie.hu-berlin.de/gk
BioCentrum Amsterdam http://www.science.uva.nl/biocentrum/
Bioinformatics Graduate Program Boston University http://www.bu.edu/bioinformatics
Kyoto Bioinformatics Center http://www.bic.kyoto-u.ac.jp/