====== Systems Biology Software ======

  * CellDesigner 4.0.1 (including plugin SBMLsqueezer 1.3)
  * COPASI 4.5.30
  * Cytoscape 2.6.3 (including plugin BiNoM)
  * Edinburgh Pathway Editor 1.3.0
  * ISATools 1.1
  * libSBML 3.4.1
  * modelMage 1.0beta
  * OpenAlea
  * SBML2LaTeX 0.9.8
  * SBML-PET 2.3.5
  * SBMLeditor 1.3.4
  * SystemsBiologyWorkbench 2.7.10
  * semanticSBML 1.0.11
  * STSE
  * Taverna 2.1
  * vanted 1.8
  * TiDE 1.2.1
  * Xppaut 6.0

====== Systems Biology Models ======

  * BioModels Database
  * Yeast consensus model version 2.0

===== Convenience Tools =====

  * gtk-recordMyDesktop
  * XML Copy Editor 1.2.0.6

===== Python =====

  * epydoc
  * NumArray
  * NumPy
  * Python 2.5, IPython
  * PyX
  * Soappy
  * SciPy