====== Systems Biology Software ======

  * CellDesigner 4.0.1 (including plugin SBMLsqueezer 1.1)
  * COPASI 4.4.29
  * semanticSBML 1.0.8
  * Xppaut 5.98
  * TiDE
  * Cytoscape 2.6.2 (including plugin BiNoM)
  * SBMLeditor
  * SBML2LaTeX
  * OpenAlea
  * libSBML 3.3.2
  * R 2.8
  * Taverna 2.1 beta 2 
  * ISA-Tools: ISAcreator ... 
  * SBGN: EPE Edinburgh Pathway Editor SBGN
  * SBGN: Arcadia

====== Systems Biology Models ======

  * BioModels Database
  * Yeast consensus model version 2.0



===== Convenience Tools =====

  * gtk-recordMyDesktop
  * XML Copy Editor 1.2.0.2

===== Python =====

  * epydoc
  * NumArray
  * NumPy
  * Python 2.5, IPython
  * PyX
  * Soappy
  * SciPy