[[software_python2|Python 2 packages]]\\
[[software_python3|Python 3 packages]]\\
[[software_R|R packages]]\\
antimony	2.9.4-1\\
ash	0.5.9.1-1\\
behaviorsearch	6.0.2-1\\
bfg	1.12.14-1\\
binom	2.5-1\\
bioformats-java	1.3.2-1\\
biomodels	31-1\\
biomodels-non-curated	31-1\\
bionetgen	2.2.6-1\\
bower	1.7.9-1\\
budgie-core	10.2.9-2\\
budgie-desktop	10.2.9-2\\
cain	1.10+dfsg-2\\
cain-solvers	1.10+dfsg-2\\
caja-owncloud	2.3.4-1\\
caml2html	1.4.4-1\\
camlp4	4.05+1-3\\
catch2	2.0.1-1\\
ccp4srs-bin	7~20160107-1\\
celldesigner	4.4-2\\
celldesigner-bin	4.4-2\\
celldesigner-plugin-sbmlsqueezer	2.1-1\\
cellid	1.4.6+dfsg-1\\
cellprofiler	3.0.0rc7-2\\
cmake	3.6.2-2\\
cmake-curses-gui	3.6.2-2\\
cmake-data	3.6.2-2\\
cmake-qt-gui	3.6.2-2\\
cobra-toolbox	2.0.6.1-1\\
coot	0.8.7-1\\
copasi	4.21.166-1\\
copasi-dependencies	4.22.1-1\\
cppo	1.5.0-3\\
ctdb	4.5.6+dfsg-1\\
cython	0.25.1-1\\
cython3	0.25.1-1\\
cytoscape	2.8.4-2\\
cytoscape3	3.6.0-1\\
cytoscape-plugin-rpc	1.8-1\\
dash	0.5.9.1-1\\
dh-golang	1.17\\
dh-r	20161130\\
dolfin-bin	2017.1.0-4\\
dolphin-owncloud	2.3.4-1\\
ess	17.11-2\\
fasimu	2.3.4-1\\
ffmpeg	3.4-1\\
fiji	20180117-1\\
fiji-bin	20180117-1\\
fiji-plugin-mosaic	0.1-1\\
fonts-font-awesome	4.2.0~dfsg-1\\
fonts-sourcecodepro	2.010-1\\
freerdp2-shadow-x11	2.0.0~git20161130.1.e60d0d5+dfsg1-1\\
freerdp2-wayland	2.0.0~git20161130.1.e60d0d5+dfsg1-1\\
freerdp2-x11	2.0.0~git20161130.1.e60d0d5+dfsg1-1\\
gathode	0.4.0-1\\
gir1.2-budgie-desktop-1.0	10.2.9-2\\
git	2.11.0-2\\
git-all	2.11.0-2\\
git-arch	2.11.0-2\\
git-core	2.11.0-2\\
git-cvs	2.11.0-2\\
git-daemon-run	2.11.0-2\\
git-daemon-sysvinit	2.11.0-2\\
git-el	2.11.0-2\\
git-email	2.11.0-2\\
git-gui	2.11.0-2\\
gitk	2.11.0-2\\
git-lfs	2.2.1-1\\
git-man	2.11.0-2\\
git-mediawiki	2.11.0-2\\
git-svn	2.11.0-2\\
gitweb	2.11.0-2\\
glpkmex	2.11-4\\
golang-1.7	1.7.4-1\\
golang-1.7-go	1.7.4-1\\
golang-1.7-src	1.7.4-1\\
google-mock	1.8.0-6\\
googletest	1.8.0-6\\
gradle-ice-builder-plugin	1.4.4-1\\
guilayout	2.3.1-1\\
hevea	2.30-2\\
ibiosim	2.8.1-1\\
imagej	1.51t-1\\
ipython3	6.2.1-1\\
ipython	5.5.0-2\\
ipython-qtconsole	4.3.0-1\\
isympy	1.1.1-1\\
isympy3	1.1.1-1\\
jags	4.2.0-3\\
jsim	2.0.6-1\\
kasim	4.0rc1-1\\
labltk	8.06.2+dfsg-2\\
ldb-tools	1.1.27-1\\
libamd2	4.5.3-2\\
libantimony	2.9.4-1\\
libapache2-mod-netcgi-apache	4.1.2-3\\
libatdgen-ocaml	1.9.1-3\\
libatd-ocaml	1.1.2-2\\
libavcodec57	3.4-1\\
libavcodec-extra	3.4-1\\
libavcodec-extra57	3.4-1\\
libavdevice57	3.4-1\\
libavfilter6	3.4-1\\
libavfilter-extra	3.4-1\\
libavfilter-extra6	3.4-1\\
libavformat57	3.4-1\\
libavresample3	3.4-1\\
libav-tools	3.4-1\\
libavutil55	3.4-1\\
libbiniou-ocaml	1.0.12-2\\
libbtf1	4.5.3-2\\
libbudgie-plugin0	10.2.9-2\\
libbudgietheme0	10.2.9-2\\
libcamd2	4.5.3-2\\
libcaml2html-ocaml	1.4.4-1\\
libccolamd2	4.5.3-2\\
libccp4c0	6.5.1-1\\
libccp4-data	6.5.1-1\\
libccp4f0	6.5.1-1\\
libccp4srs0	7~20160107-1\\
libcellml	1.13.1-1\\
libcellml-java	1.13.1-1\\
libcholmod3	4.5.3-2\\
libclastfm0	0.6-1\\
libclipper2	2.1.20160809-1\\
libcolamd2	4.5.3-2\\
libcombine0	0.2.2-1\\
libcoot0	0.8.7-1\\
libcxsparse3	4.5.3-2\\
libdolfin2016.2	2016.2.0-2\\
libdolfin2017.1	2017.1.0-4\\
libeasy-format-ocaml	1.2.0-3\\
libf2c2	20100827-0\\
libffi5	3.0.9-1\\
libfindlib-ocaml	1.7.3-2\\
libfreerdp2	2.0.0~git20161130.1.e60d0d5+dfsg1-1\\
libfreerdp-client2	2.0.0~git20161130.1.e60d0d5+dfsg1-1\\
libfreerdp-server2	2.0.0~git20161130.1.e60d0d5+dfsg1-1\\
libfreerdp-shadow2	2.0.0~git20161130.1.e60d0d5+dfsg1-1\\
libgin-java	2.1.2-1\\
libglpk0	4.48-2\\
libgpuarray2	0.6.9-2\\
libgpuarray3	0.7.5-1\\
libgwt-java	2.8.1-1\\
libhypre-2.11.1	2.11.1-3\\
libhypre-2.11.2	2.11.2-1\\
libiso9660-10	0.93-1\\
libjogl-java	1.1.1+dak1-13\\
libjogl-jni	1.1.1+dak1-13\\
libjs-backbone	1.3.3~dfsg-1\\
libjs-d3-format	1.2.0-1\\
libjs-es6-promise	3.2.2+ds-1\\
libjs-html2canvas	0.5.0~beta4+ds1-2\\
libjs-jed	1.1.1-1\\
libjs-jquery-typeahead	2.10.1+dfsg1-1\\
libjs-jquery-ui	1.12.1+dfsg-3\\
libjs-moment	2.18.1+ds-1\\
libjs-preact	8.2.5-1\\
libjs-preact-compat	8.2.5-1\\
libjs-proptypes	1.1.0-1\\
libjs-requirejs	2.3.2-1\\
libjs-requirejs-plugins	1.0.3-1\\
libjs-requirejs-text	2.0.12-1\\
libjs-source-map	0.5.6+dfsg-1\\
libjs-uglify	3.1.1-1\\
libjs-underscore	1.8.3~dfsg-1\\
libjs-xterm	2.7.0+ds1-1\\
libklu1	4.5.3-2\\
liblablgl-ocaml	1.05-3\\
liblablgtk2-gl-ocaml	2.18.5+dfsg-2\\
liblablgtk2-gnome-ocaml	2.18.5+dfsg-2\\
liblablgtk2-ocaml	2.18.5+dfsg-2\\
liblablgtksourceview2-ocaml	2.18.5+dfsg-2\\
liblabltk-ocaml	8.06.2+dfsg-2\\
libldb1	1.1.27-1\\
libldl2	4.5.3-2\\
liblwt-glib-ocaml	2.7.1-5\\
liblwt-ocaml	2.7.1-5\\
liblwt-ssl-ocaml	2.7.1-5\\
libmikmatch-ocaml	1.0.8-2\\
libminizip1	1.1+git-1\\
libmmdb2-0	2.0.5-1\\
libmsgpackc2	1.4.2-4\\
libmshr2016.2	2016.2.0-1\\
libmshr2017.1	2017.1.0-1\\
libnss-winbind	4.5.6+dfsg-1\\
libnuml1	1.1.1-1\\
libocamlnet-ocaml	4.1.2-3\\
libocamlnet-ocaml-bin	4.1.2-3\\
libocamlnet-ssl-ocaml	4.1.2-3\\
libodbc1	2.3.4-1\\
libode1	0.11.1-5\\
libode1sp	0.11.1-5\\
libopenmpt0	0.2.8760~beta27-1\\
libopenmpt-modplug1	0.2.8760~beta27-1\\
libowncloudsync0	2.3.4-1\\
libpam-winbind	4.5.6+dfsg-1\\
libparse-pidl-perl	4.5.6+dfsg-1\\
libpcap0.8	1.8.1-3\\
libpcre-ocaml	7.2.3-3\\
libpetsc3.7.4	3.7.4+dfsg1-9\\
libpetsc3.7.5	3.7.5+dfsg1-5\\
libpetsc-complex-3.7.4	3.7.4+dfsg1-9\\
libpetsc-complex-3.7.5	3.7.5+dfsg1-5\\
libpococpp42	1.7.2-1\\
libpococrypto42	1.7.2-1\\
libpocodata42	1.7.2-1\\
libpocofoundation42	1.7.2-1\\
libpocojson42	1.7.2-1\\
libpocomongodb42	1.7.2-1\\
libpocomysql42	1.7.2-1\\
libpoconet42	1.7.2-1\\
libpoconetssl42	1.7.2-1\\
libpocoodbc42	1.7.2-1\\
libpocopdf42	1.7.2-1\\
libpocosqlite42	1.7.2-1\\
libpocoutil42	1.7.2-1\\
libpocoxml42	1.7.2-1\\
libpocozip42	1.7.2-1\\
libpostproc54	3.4-1\\
libqt4qevercloud3	3.0.3+ds-2\\
libqt5qevercloud3	3.0.3+ds-2\\
libraven0	10.2.9-2\\
librbio2	4.5.3-2\\
libreact-ocaml	1.2.0-4\\
libresult-ocaml	1.2-2\\
libroadrunner1	1.4.24-1\\
libsbml5	5.16.0+sbos-1\\
libsbml5-cil	5.16.0+sbos-1\\
libsbml5-java	5.16.0+sbos-1\\
libsbml5-matlab	5.16.0+sbos-1\\
libsbml5-perl	5.16.0+sbos-1\\
libsbml5-python	5.16.0+sbos-1\\
libsbmlsim1	1.4.0-1\\
libsbmlsim1.4	1.4.0-2\\
libsbw-core	2.11.1-1\\
libsedml0	0.4.3-2\\
libslepc3.7.3	3.7.3+dfsg1-4\\
libslepc3.7.4	3.7.4+dfsg1-1\\
libslepc-complex-3.7.3	3.7.3+dfsg1-4\\
libslepc-complex-3.7.4	3.7.4+dfsg1-1\\
libsmbclient	4.5.6+dfsg-1\\
libspqr2	4.5.3-2\\
libssl1.0.2	1.0.2n-1\\
libssl1.1	1.1.0f-3\\
libssl-ocaml	0.5.3-2\\
libssm2	1.4.0-1\\
libsuitesparseconfig4	4.5.3-2\\
libsundials-arkode1	2.7.0+dfsg-5\\
libsundials-cvode1	2.6.2-2\\
libsundials-cvode2	2.7.0+dfsg-5\\
libsundials-cvodes2	2.7.0+dfsg-5\\
libsundials-ida2	2.7.0+dfsg-5\\
libsundials-idas0	2.6.2-2\\
libsundials-idas1	2.7.0+dfsg-5\\
libsundials-kinsol1	2.6.2-2\\
libsundials-kinsol2	2.7.0+dfsg-5\\
libsundials-nvecparallel-hypre2	2.7.0+dfsg-5\\
libsundials-nvecparallel-mpi2	2.7.0+dfsg-5\\
libsundials-nvecparallel-openmp2	2.7.0+dfsg-5\\
libsundials-nvecparallel-petsc2	2.7.0+dfsg-5\\
libsundials-nvecparallel-pthread2	2.7.0+dfsg-5\\
libsundials-nvecpthreads0	2.6.2-2\\
libsundials-nvecpthreads2	2.7.0-1\\
libsundials-nvecserial0	2.6.2-2\\
libsundials-nvecserial2	2.7.0+dfsg-5\\
libsundials-serial	2.7.0-1\\
libsuperlu5	5.2.1+dfsg1-2\\
libsuperlu-dist5	5.2.2+dfsg1-3\\
libswresample2	3.4-1\\
libswscale4	3.4-1\\
libtalloc2	2.1.8-1\\
libtdb1	1.3.11-2\\
libtevent0	0.9.31-2\\
libtext-ocaml	0.8-2\\
libtgvoip1.0	1.0~git20170704.445433f-4\\
libudev0	175-0\\
libudf0	0.93-1\\
libumfpack5	4.5.3-2\\
libuwac0	2.0.0~git20161130.1.e60d0d5+dfsg1-1\\
libvigraimpex6	1.10.0+git20160211.167be93+dfsg-2\\
libwbclient0	4.5.6+dfsg-1\\
libwinpr2	2.0.0~git20161130.1.e60d0d5+dfsg1-1\\
libwinpr-tools2	2.0.0~git20161130.1.e60d0d5+dfsg1-1\\
libxp6	1.0.2-1\\
libyojson-ocaml	1.3.2-1\\
libzeroc-freeze3.6	3.6.3-2\\
libzeroc-ice3.6	3.6.3-2\\
libzeroc-ice3.6-java	3.6.3-2\\
libzeroc-icestorm3.6	3.6.3-2\\
libzip-ocaml	1.06-3\\
libzipper0	0.9.1-1\\
licensecheck	3.0.31-1\\
light-locker-settings	1.5.0-1\\
littler	0.3.3-1\\
lmfit6	6.1-1\\
lrzip	0.631-1\\
lumina	1.4.0-1\\
lusol-matlab	0.20160126-1\\
matcont	6.9-1\\
mathsbml	12.02.001-1\\
mendeleydesktop	1.17.13\\
minizip	1.1+git-1\\
mp3gain	1.6.1-1\\
mshr-demos	2017.1.0-1\\
nautilus-owncloud	2.3.4-1\\
nemo-owncloud	2.3.4-1\\
nethogs	0.8.5-2\\
netlogo	6.0.2-1\\
nfsim	1.11-2\\
nixnote	2.0beta8-1\\
nixnote2	2.0.2-1\\
node-ansi-styles	3.2.0-1\\
node-ast-types	0.9.5-1\\
node-backbone	1.3.3~dfsg-1\\
node-chalk	2.1.0-1\\
node-commander	2.11.0-1\\
node-d3-format	1.2.0-1\\
node-es6-promise	3.2.2+ds-1\\
node-escape-string-regexp	1.0.5-1\\
node-escodegen	1.9.0+dfsg-1\\
node-esprima	4.0.0+ds-1\\
node-estraverse	4.2.0-1\\
node-has-ansi	2.0.0-1\\
node-html2canvas	0.5.0~beta4+ds1-2\\
node-jquery-ui	1.12.1+dfsg-3\\
node-moment	2.18.1+ds-1\\
node-recast	0.11.22-1\\
node-requirejs	2.3.2-1\\
node-source-map	0.5.6+dfsg-1\\
node-strip-ansi	3.0.1-1\\
node-supports-color	3.2.3-1\\
node-uglify	3.1.1-1\\
node-underscore	1.8.3~dfsg-1\\
node-xterm	2.7.0+ds1-1\\
node-yargs	7.0.0-1\\
numpypy	1.10.1-1\\
ocaml	4.05.0-10\\
ocaml-base	4.05.0-10\\
ocaml-base-nox	4.05.0-10\\
ocamlbuild	0.11.0-3\\
ocaml-compiler-libs	4.05.0-10\\
ocaml-findlib	1.7.3-2\\
ocaml-interp	4.05.0-10\\
ocaml-mode	4.05.0-10\\
ocaml-nox	4.05.0-10\\
ocaml-source	4.05.0-10\\
octave-libsbml	5.13.0+sbos-1\\
octave-sundials	2.7.0+dfsg-5\\
odbcinst1debian2	2.3.4-1\\
odbcinst	2.3.4-1\\
omero-client	5.4.2-1\\
openmpt123	0.2.8760~beta27-1\\
openssl	1.1.0f-3\\
openstack-pkg-tools	54\\
owncloud-client	2.3.4-1\\
owncloud-client-cmd	2.3.4-1\\
owncloud-client-data	2.3.4-1\\
owncloud-client-l10n	2.3.4-1\\
pep8	1.7.0-4\\
php-zeroc-ice	3.6.3-2\\
plotdigitizer	2.6.8-1\\
poco-bin	1.7.2-1\\
poolos-desktop	0.2-2\\
pragha	1.3.3-1\\
prokaryote-java	2.3.2-1\\
protege	5.0.0-1\\
protege-plugins	4.2.288-1\\
pycharm	2017.2.4-1\\
pycharm-pro	2017.2.4-1\\
pycodestyle	2.3.1-1\\
pymca	5.2.2+dfsg-2\\
pymca-data	5.2.2+dfsg-2\\
pymol	2.0.7-1\\
pypy	5.9.0+dfsg-1\\
pypy-lib	5.9.0+dfsg-1\\
pypy-lib-testsuite	5.9.0+dfsg-1\\
pypy-tk	5.9.0+dfsg-1\\
readplate	0.1-1\\
recommonmark-scripts	0.4.0+ds-2\\
registry-tools	4.5.6+dfsg-1\\
reprepro	5.1.1-1\\
ripgrep	0.7.1-1\\
robomongo	0.8.5-1\\
rr-libsbml5	5.16.0-1\\
rstudio	1.1.414\\
rstudio-server	1.1.414\\
rulebuilder	1.51-2\\
samba	4.5.6+dfsg-1\\
samba-dsdb-modules	4.5.6+dfsg-1\\
samba-libs	4.5.6+dfsg-1\\
samba-testsuite	4.5.6+dfsg-1\\
samba-vfs-modules	4.5.6+dfsg-1\\
sbml2latex	0.9.9-1\\
sbml2matlab	1.2.3-1\\
sbmleditor	2.0-b2-1\\
sbml-pet-mpi	1.2-1\\
sbml-pet-single	1.1-1\\
sbmlsqueezer	2.1-1\\
sb.os-desktop	1.0-3\\
sb.os-grub2-splash	2-2\\
sbos-keyring	20161004-1\\
sbpop	1361-1\\
scikits.odes	2.3.1-1\\
semanticsbml	1.1.0-5\\
simulatesbml	1.4.0-2\\
skypeforlinux	8.11.0.4\\
smbclient	4.5.6+dfsg-1\\
soplex	2.2.1-1\\
starwars-telnet	1-3\\
sublime-text	3143\\
sundials-toolbox	2.7.0+dfsg-5\\
sysbio	2-6\\
taverna-workbench	2.5.0-1\\
tcpdump	4.9.0-1\\
tdb-tools	1.3.11-2\\
textext	0.4.4-1\\
thbp-certificates	0.2-2\\
ttf-mscorefonts-installer	3.6\\
unhide	20130526-1\\
unixodbc	2.3.4-1\\
vanted	2.6.4-1\\
vcellid	0.4-4\\
vim	7.4.1990-1\\
vim-athena	7.4.1990-1\\
vim-gnome	7.4.1990-1\\
vim-gtk3	7.4.1990-1\\
vim-gtk	7.4.1990-1\\
vim-nox	7.4.1990-1\\
vim-python-jedi	0.9.0-1\\
vim-runtime	7.4.1990-1\\
vim-tiny	7.4.1990-1\\
vmware-horizon-view	4.2.0-2\\
winbind	4.5.6+dfsg-1\\
winpr-utils	2.0.0~git20161130.1.e60d0d5+dfsg1-1\\
xds-viewer	0.6-1\\
xmind	8.5-1\\
xmind-fonts	8.5-1\\
xppaut	8.0.0-1\\
xxdiff	4.0.1+dfsg-1\\
xxdiff-scripts	4.0.1+dfsg-1\\
zeroc-glacier2	3.6.3-2\\
zeroc-ice-all-runtime	3.6.3-2\\
zeroc-icebox	3.6.3-2\\
zeroc-ice-compilers	3.6.3-2\\
zeroc-icegrid	3.6.3-2\\
zeroc-icegridgui	3.6.3-2\\
zeroc-icepatch2	3.6.3-2\\
zeroc-ice-slice	3.6.3-2\\
zeroc-ice-utils	3.6.3-2\\