Link collection

The collected links will be included as browser bookmarks in future versions of SB.OS.

Systems Biology Graphical Notation (SBGN) Templates (use this to standardize your graphical network models) http://sbgn.org/Documents/Templates

Wikipedia http://www.wikipedia.org/

Social Network: myExperiment makes it easy to find, use and share scientific workflows and other Research Objects http://www.myexperiment.org/

OpenHelix On-demand, multimedia, narrated tutorials on a large number of the most popular and powerful free web-based bioinformatics tools. You get the web tutorial, PowerPoint slides, handouts, and exercises. http://openhelix.com/

Minimum Information Checklists for Biologial Data: MIBBI Minimum Information for Biological and Biomedical Investigations http://mibbi.sourceforge.net/

Insert your title and/or abstract and get suggestion in which journal you should publish http://www.biosemantics.org/jane/

Open source SOPs http://openwetware.org/

Links to Bioinformatics/Systems Biology tools and resources http://www.bioinfowiki.mpg.de/

Systems Biology - A Textbook http://eu.wiley.com/WileyCDA/WileyTitle/productCd-3527318747.html

SBML www.sbml.org

MIRIAM resources http://www.ebi.ac.uk/miriam/

BioModels Database http://www.ebi.ac.uk/biomodels-main/

JWS model database http://jjj.biochem.sun.ac.za/database/

E-cell http://www.e-cell.org/ecell/

Zotero is a free, easy-to-use Firefox extension to help you collect, manage, and cite your research sources. It lives right where you do your work—in the web browser itself. http://www.zotero.org/

Ubuntu Science Software https://help.ubuntu.com/community/UbuntuScience

Pathguide contains information about 299 biological pathway resources (hinting SBML/BioPAX/CellML export capability ) http://www.pathguide.org/

Sacharomyces Genome Database http://www.yeastgenome.org/

Thermodynamics of Enzyme-Catalyzed Reactions http://xpdb.nist.gov/enzyme_thermodynamics/

EMBL Nucleotide Sequence Database http://www.ebi.ac.uk/embl

Fly View - Drosophila development and genetics http://pbio07.uni-muenster.de/

GenBank - all known nucleotide and protein sequences http://www.ncbi.nlm.nih.gov/Genbank/GenbankOverview.html

Kyoto Encyclopedia of Genes and Genomes (KEGG) http://www.genome.ad.jp/kegg

PDB - Structure data determined by X-ray crystallography and NMR http://www.rcsb.org/pdb

WikiPathways In the new tradition of Wikipedia, WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community. http://www.wikipathways.org/

Reactome - a curated knowledgebase of biological pathways http://www.reactome.org/

BioCyc is a collection of 507 Pathway/Genome Databases. http://biocyc.org/

Ontology Lookup Service http://www.ebi.ac.uk/ontology-lookup/

BioCatalogue: providing a curated catalogue of Life Science Web Services. http://www.biocatalogue.org/

LaTeX Bibliography Styles Database http://bst.maururu.net/

The Database of Useful Biological Numbers http://bionumbers.hms.harvard.edu/

Innovationskolleg Theoretische Biologie (ITB) - Hanspeter Herzel, Peter Hammerstein, Andreas Herz http://itb.biologie.hu-berlin.de/

Theoretical Biochemistry, Charité - Hermann-Georg Holzhütter http://www.charite.de/

Göteborg Yeast Centre - Stefan Hohmann http://www.gmm.gu.se/gyc/index.html

Metabolic Control Analysis Research Group - David Fell http://bms-mudshark.brookes.ac.uk/

Molecular Cell Physiology - Hans Westerhoff http://www.bio.vu.nl/vakgroepen/mcp/

Computational Physiology Hamiliton Institute - Wilhelm Huisinga http://www.hamilton.ie/compphysiol/

Institut für Biologie, Humboldt-Universität http://www.biologie.hu-berlin.de/

Zentrum für BioPhysik und BioInformatik der Humboldt-Universität (BPI) http://www.biologie.hu-berlin.de/%7EBPI/

Humboldt University Research Initiative „Systems Biology“ http://bioinf.charite.de/biophys/systemsbiology/

SFB 555 Complex Nonlinear Processes http://sfb555.physik.hu-berlin.de/

SFB 618 Theoretical Biology: Robustness, Modularity and Evolutionary Design of Living Systems http://www.biologie.hu-berlin.de/forschung/SFB_618/

Graduate program - Dynamics and evolution of cellular and macromolecular processes http://www.biologie.hu-berlin.de/gk

BioCentrum Amsterdam http://www.science.uva.nl/biocentrum/

Bioinformatics Graduate Program Boston University http://www.bu.edu/bioinformatics

Kyoto Bioinformatics Center http://www.bic.kyoto-u.ac.jp/